Protein Info for UW163_RS19550 in Ralstonia solanacearum UW163

Annotation: iron dicitrate transport regulator FecR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 transmembrane" amino acids 87 to 105 (19 residues), see Phobius details PF16220: DUF4880" amino acids 11 to 51 (41 residues), 57.2 bits, see alignment 1.2e-19 PF04773: FecR" amino acids 113 to 203 (91 residues), 49.1 bits, see alignment E=6.7e-17

Best Hits

KEGG orthology group: None (inferred from 90% identity to rsl:RPSI07_mp0796)

Predicted SEED Role

"FIG00978191: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (315 amino acids)

>UW163_RS19550 iron dicitrate transport regulator FecR (Ralstonia solanacearum UW163)
MKQPLNDRIAEQAIQWLVLLRSGMASEADRQRFAAWREASPAHADAVRRLEGGLGAVALP
SVPMPHRQAARRLLDTAPSPLRHARRALLVGGMGVGVAALVDLQMPLSDLTADMRTATSE
RRDFKLAGGHQLRLNARSAVDVVPVVHGYNVRLRRGSVLAVAGAWERLRVSSPAGEVECA
RGMVCTSLDAEGGMTVAVLDGSVALSTPTGASTVAHSGGVHRLGRAGIELLRLSARSVAA
WTQGMVEVEHQPLADVIAALRPYHAGMIELHPDAAGLHVTGRFPLDPRRALQMLVDTLPI
DVRYIAGLWVRISRR