Protein Info for UW163_RS19140 in Ralstonia solanacearum UW163

Annotation: type VI secretion system baseplate subunit TssF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 616 PF05947: T6SS_TssF" amino acids 2 to 612 (611 residues), 658.2 bits, see alignment E=6.9e-202 TIGR03359: type VI secretion protein, TIGR03359 family" amino acids 4 to 615 (612 residues), 731.3 bits, see alignment E=5.8e-224

Best Hits

KEGG orthology group: K11896, type VI secretion system protein ImpG (inferred from 97% identity to rsl:RPSI07_mp0660)

Predicted SEED Role

"Protein ImpG/VasA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (616 amino acids)

>UW163_RS19140 type VI secretion system baseplate subunit TssF (Ralstonia solanacearum UW163)
MEELLPYYERELAFLRRYSRDFAERYPKIAGRLAMSGDGCDDPHVERMIESFSLLTARVS
KKLDDDYPEFTEALLEVLYPHYLRPFPSCSVVHFDVRGVAAQISAPMLIPRGTFLTSRVV
RKVECRFRTAYDVTFAPVRIAAAAFERAVSAPSAVSLPKGATGAIALTLEYVGERGGFES
LPLDRLRVYMDGEPSFVAALGDALFLQTAAAYVEGERPGVWTRLSGVPLQAVGFTEDEAL
IDCPPRSHPAYRLLTEHFSFAEKFNFFDIDLAAVRRGLTPGVPVRQLVLHLVLKDVRSDS
HAARLLEGLQADHLRLHCTPVVNLFQQMADPIRIEHTASAYPVVADSRRAHGFDIYSIDK
VHLVRETAAHEEVTEFRPFYSLHHGEEPGQSGHYWIARRNELVAQRSPGFETEISIVDTQ
FDPASPQTDTLSLTVTCTNRDLPSTLAFGQPEGDLSMEGGSIARSITFLRKPTPSMRLGG
GRAAQWRLISLLALNHLSLVQNGLPTLKEMLRLHDLPHSAISARQVEGIVGLDYAPATRW
LAGKPFATFVRGLEIRLTLDEDAFVGTGLHRFIRVLDHFFGLYVHINSFVQLIAVSRRSG
KELVRCAPRSGESILV