Protein Info for UW163_RS19075 in Ralstonia solanacearum UW163

Annotation: sterol desaturase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 transmembrane" amino acids 44 to 68 (25 residues), see Phobius details amino acids 89 to 107 (19 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details amino acids 144 to 163 (20 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 223 to 242 (20 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details PF04116: FA_hydroxylase" amino acids 231 to 364 (134 residues), 104.4 bits, see alignment E=3.2e-34

Best Hits

KEGG orthology group: None (inferred from 97% identity to rsl:RPSI07_mp0624)

Predicted SEED Role

"Sterol desaturase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (408 amino acids)

>UW163_RS19075 sterol desaturase family protein (Ralstonia solanacearum UW163)
MTQPQHSATPPEQEQPPALIRVADATVRDANQLLNSNGSLVFGNGMIATILALVLGFLCL
LGVMAFHFPQYLTTPELRHAYSVDVMRKILFFSLLVSGGLALSNIVLDNRRRLNGLAFAF
VLAAVVLGGSRVQVGDFPDHTPYIGLDWFILDLLGSTVIFVLLEKLFPLYKKQPVFRPEW
QTDMVHFAVNHFIVGLVLLVVNFLIHRVFGWMVHAGFQQMVQHIWFVPQLLLCMLVADLM
EYVTHRAYHEVPFLWRFHAVHHSVKTMDWLAGSRQHILELIVTRVAVLGPLFVLGFDKSV
VDTYIIIVGFQAVFNHANVHLPWGPLKYIFVTPDFHHWHHSSEDEAIDKNYAAHFAFIDY
LFGTAVKSKKAFPEKYGVVGDYMPDGFVNQQRFPFRRNPTHPATPTPT