Protein Info for UW163_RS18920 in Ralstonia solanacearum UW163

Annotation: DUF2165 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 66 to 87 (22 residues), see Phobius details amino acids 106 to 130 (25 residues), see Phobius details amino acids 142 to 158 (17 residues), see Phobius details PF09933: DUF2165" amino acids 5 to 160 (156 residues), 200.7 bits, see alignment E=7.6e-64

Best Hits

KEGG orthology group: None (inferred from 89% identity to rsl:RPSI07_mp0591)

Predicted SEED Role

"probable membrane protein YPO0899"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (165 amino acids)

>UW163_RS18920 DUF2165 domain-containing protein (Ralstonia solanacearum UW163)
MIDTRIAKACMVLALAAFALTVAYNNVVDFNTNYVYVQHVFSMDTVFPDTALKSRAIVSE
RVWRAGYWLIIVCEAAIGVLFLLGAVAMWRARRQPAAVFRRAKTPVYAAATLGFLLWFFG
FVVVGGEWFLMWQSRTWNGIQPSFRIYLSILGVLIFVNQPDPDAP