Protein Info for UW163_RS17840 in Ralstonia solanacearum UW163

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 53 to 71 (19 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 137 to 160 (24 residues), see Phobius details amino acids 167 to 184 (18 residues), see Phobius details amino acids 196 to 217 (22 residues), see Phobius details amino acids 229 to 246 (18 residues), see Phobius details amino acids 267 to 287 (21 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details amino acids 331 to 350 (20 residues), see Phobius details amino acids 356 to 377 (22 residues), see Phobius details amino acids 398 to 419 (22 residues), see Phobius details amino acids 431 to 452 (22 residues), see Phobius details TIGR00711: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family" amino acids 15 to 415 (401 residues), 294 bits, see alignment E=1.1e-91 PF07690: MFS_1" amino acids 18 to 408 (391 residues), 181.9 bits, see alignment E=1.7e-57 amino acids 271 to 448 (178 residues), 49.2 bits, see alignment E=4e-17 PF00083: Sugar_tr" amino acids 40 to 190 (151 residues), 40.6 bits, see alignment E=1.6e-14

Best Hits

KEGG orthology group: None (inferred from 86% identity to rso:RS03124)

Predicted SEED Role

"Nucleoside ABC transporter, permease protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (468 amino acids)

>UW163_RS17840 MFS transporter (Ralstonia solanacearum UW163)
MKASGFDRTQKWVLILTSIATLMAMLDAMVVATATSAIRADLGASLSTLQWTMNAYNLSL
AALLLTGAALGDRFGRRLVFVTGLAVFVVASVACALARSAEWLIAARVVQGAGAALVTPL
SMALLSAAFPPERRGKALGLFSGITGLALILGPVLGGVIAGNMAWQWIFWLNVPIGLPLI
LLVIRRIPESKGPAVSLDIPGALLVMGASIGLIWGLMRGSNTGWSDSEAPLALGIGAAFT
ICFVWWERRAKHPMVPMRLFSSRTFSSGIGACFLFYAGMYGVVFFLPQFFQSAQGHGPLA
AGLRLLPWTATLFFIAPVAGNMVDRIGERPVMVAGLLLQTIGFAWIAWVASPGTAYLNLV
VPLAVAGAGISMAGPAAQKAVLGAVAMQEIGKASGIFNMARILGGATGIAIAVVAFSIWG
SLGSDRDFSEGFAHVMVICAALSVLSVASAGWSATHRATTATNSVNPG