Protein Info for UW163_RS17700 in Ralstonia solanacearum UW163

Annotation: DUF1345 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 230 transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 53 to 73 (21 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 126 to 150 (25 residues), see Phobius details amino acids 176 to 190 (15 residues), see Phobius details amino acids 206 to 229 (24 residues), see Phobius details PF07077: DUF1345" amino acids 51 to 220 (170 residues), 203.4 bits, see alignment E=1.1e-64

Best Hits

KEGG orthology group: None (inferred from 92% identity to rso:RS00867)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (230 amino acids)

>UW163_RS17700 DUF1345 domain-containing protein (Ralstonia solanacearum UW163)
MPGRTHVKQPGESAEPMAVQRFVATRPRLLAALMLGALAGILAPIESSRLTRILLGWDVA
VWAYLLLAGAMMLRANPRRIQAVARREDERAAAVLAAVCVGVIASVVAIAFELATAKSAG
HAQAAHYAFTGVTVLGAWLMVPMMFTVHYAHLYYRTDGEPPLQFPDRQIVPDYWDFLYFS
FTIAVASQTADVGIRSRAMRRAVLGQSLLSFFFNTSILALSINIAAGLFS