Protein Info for UW163_RS16845 in Ralstonia solanacearum UW163

Annotation: hemagglutinin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1564 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF05662: YadA_stalk" amino acids 163 to 205 (43 residues), 29.4 bits, see alignment (E = 2.5e-10) amino acids 252 to 295 (44 residues), 32.9 bits, see alignment (E = 2.1e-11) amino acids 349 to 393 (45 residues), 30.3 bits, see alignment (E = 1.4e-10) amino acids 439 to 482 (44 residues), 28.2 bits, see alignment (E = 6e-10) amino acids 536 to 578 (43 residues), 34.9 bits, see alignment (E = 4.7e-12) amino acids 633 to 677 (45 residues), 26.8 bits, see alignment (E = 1.6e-09) amino acids 737 to 779 (43 residues), 27 bits, see alignment (E = 1.4e-09) amino acids 834 to 877 (44 residues), 30.7 bits, see alignment (E = 9.8e-11) amino acids 931 to 973 (43 residues), 34.6 bits, see alignment (E = 6e-12) amino acids 1028 to 1070 (43 residues), 27 bits, see alignment (E = 1.4e-09) amino acids 1125 to 1168 (44 residues), 31.7 bits, see alignment (E = 4.8e-11) amino acids 1249 to 1282 (34 residues), 32.6 bits, see alignment (E = 2.5e-11) amino acids 1312 to 1346 (35 residues), 42.3 bits, see alignment (E = 2.4e-14) amino acids 1434 to 1457 (24 residues), 26.7 bits, see alignment (E = 1.7e-09) PF05658: YadA_head" amino acids 1191 to 1217 (27 residues), 22 bits, see alignment (E = 5.3e-08) amino acids 1362 to 1388 (27 residues), 17.6 bits, see alignment (E = 1.2e-06) amino acids 1392 to 1416 (25 residues), 25.4 bits, see alignment (E = 4.4e-09) PF03895: YadA_anchor" amino acids 1506 to 1564 (59 residues), 60.3 bits, see alignment (E = 4.5e-20)

Best Hits

Predicted SEED Role

"Autotransporter adhesin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1564 amino acids)

>UW163_RS16845 hemagglutinin (Ralstonia solanacearum UW163)
MKNAMAGRPPFPVSALVVSTAPDHCAEYIFGKSKNGARAHAVLFGLAMVVCSTMPQSAFA
EMVFNNEPGTTCLAVGDAYSGVGNSESCAVGSDAAAKVQDGQAYGNSLGKLSPGNNILVY
GSTSRRKKNDNTRLLDSMNMGGNLDVWGGTAFHGGVDMNNTGIKNLADGTLSATSTDAVT
GKQLNATNTRVTTVEGSVTTLQNTVSKISSSSTGLVQQSAAGKDITVAKDLDGNAVDFSG
KNLSTSETFTRKLTGLADGALSASSTDAVTGKQLYTTNQNLAETNKNLSANTTNISNLQN
TVNNISSGSAGLVQQSAAGKDITVAKDLDGGVVDFTGKNLSTSEAVTRKLTGLADGALSA
SSTDAVTGKQLNATNTRVTTAEGSITNLQNTVNNISKGSTGLVQQSAAGKDITVAKDLDG
DVVDFTGKNLSTSEAFTRKLTGLADGALSATSTDAVTGKQLYTTNQNLVETNKNLSANTT
NISNLQNTVNNISSGSAGLVQQSAAGKDITVAKDLDGGEVDFTGKNLSTSEAFTRKLTGL
ADGTLSASSTDAVTGKQLYTTNQNLNTTNTRVTTAEGSITNLQNTVNNISKGSTGLVQQS
AAGKDITVAKDLDGDVVDFSGTNLSTSETFTRKLTGLVDGTLSASSTDAVTGKQLYTTNQ
NLTDTNKNLAETNKNLSANTTNITNLQNTVNNISSGSAGLVQQSAAGQDITVAKDLDGNA
VDFTGKNLSTSETFTRKLTGLADGALSASSADAVTGKQLYTTNQNLNATNTRVTTAEGSI
TNLQNTVNNISKGSTGLVQQSVAGKDITVAKDLDGDVVDFTGKNLSTSETFTRKLTGLAD
GALSASSTDAVTGKQLYTTNQNLAETNKNLSANTTNITNLQNTVNNISSGSAGLVQQSAA
GKDITVAKDLDGDVVDFTGKNLSTSETFTRKLTGLADGTLSASSTDAVTGKQLYTTNQNL
NATNTRVTTAEGSITNLQNTVNNISKGSTGLVQQSAAGKDITVAKDLDGGEVDFTGKNLS
TSETFTRKLTGLADGALSASSADAVTGKQLYTTNQNLNATNTRVTTAEGSITNLQNTVNN
ISKGSTGLVQQSAAGKDITVAKDLDGDVVDFSGKNLSTSETFSRKLTGLADGTLSATSTD
AVTGKQLNTTNTRVTTAEGSIATLRNTMNTIVNGGGFKYLHANSTLDDAQATGLESIAIG
GAAIASGVNAMALGGNARAVAGNAVALGAGSVADRANTVSVGSAGKERQIANVAAGTADT
DAVNVAQLKAAGIINGSGGTNAAVTYGTHADGSTDYGNVTLGGGNAPGGSAIHNVAAGTA
DTDAVNVGQMHAAIASVQKGVTSAGDPMFAADGDRAVKKAIAKGTHATAMGAAASAGGNQ
SIATGHNAQSGGDSSVAMGANAKATADHAVAVGDGSVAHRANTVSVGSAGKERQVTNVAS
GTLGTDAVNLDQLNQTVFAAVGDLPAGTTAKQYTDGQISMVRQGINQVARGAYSGVAAAT
ALTMIPDVDQGKTIAVGIGSASYKGYQAVALGASARIAQHVKAKMGVGYSAEGTTVGLGA
SYQW