Protein Info for UW163_RS16090 in Ralstonia solanacearum UW163

Annotation: DUF748 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1262 transmembrane" amino acids 50 to 73 (24 residues), see Phobius details PF05359: DUF748" amino acids 40 to 421 (382 residues), 325.8 bits, see alignment E=7.1e-101 amino acids 390 to 520 (131 residues), 53.1 bits, see alignment E=1.6e-18 amino acids 530 to 1236 (707 residues), 754.4 bits, see alignment E=2.4e-230

Best Hits

KEGG orthology group: None (inferred from 96% identity to rsc:RCFBP_20585)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1262 amino acids)

>UW163_RS16090 DUF748 domain-containing protein (Ralstonia solanacearum UW163)
MTTSPDSRPDLQSNTTGWRARLGRLRSSPGWQRTARFSEQVRASRRTRHIGLGVLIFLAV
FGLLGAVGGPPLLHHLAETQLSKYLERPVTVGKIRLNPYTLRLEIDQLHIAERDGKTPFV
DIGHLHVNAAWSSIFRRAPVIEELTVDAPHVRIVRTAEQRFNFSDIVDRLTRPEVPPKPK
SNEPARFLFANLRLNNGAIQFVDQPLGAQHTVDGLQIGVPFLASLPADVDIFVQPLLAAR
IDGASLHFAGKTKPFAQSLESSLNIKLDGLDLPRYLGYVPGPLPVAIPQGKLTTDLTIDF
QKPKTGNPVLRVHGTAGLDNLEVTDAGKAPLVATKQLRATLSDVRPLDNVYHLDALSLDG
VRVDAARAADGSINFARLGGKPAPVEAKPAPSTPAAQPKPLDVAVGKLQLANSSIRWRDA
TTQPAADLVLDDLHGDVAVRTLGGPTTLDVGAKLASGGTLNVKGSTSLDKRTGELELKLD
AIKLAAVEPYLRQAGAPQLQNGALSADGKIALEFGADKFNVRAEPLIATLADLALAPATR
NDTALRAKQLRVGVKNFDLASRTLTLNEVRSDALQLDVLRKQDGSTVLTLLDPPAQAAKA
APAPAKSSTPAEKPWTVTVQTLRLDNGAVGFEDRTNSRPVKVRVEPLNVVVQNASTDLGK
PVDVQIGAGLGSKGKLDVRGNVVPQPLKADLRMNAQNLPLAGLDPYLDKSLNAAITSALL
TMDGHLALSQGKALTVSYQGNATLGNVRLQDRVTSDDFLRWRSLTLNRIQANYDGTMPRV
RVGALALSTFYARIIINPNGRLNLQDIRVQPTEEHRSLTQAQAATGPASAPVAAPGGAVA
AASTPAANPAPAVPAGTPAPAVAAAPKAGGADLRIDAITLQDGNIRFTDNFVKPNYTANL
TAIGGAVGTISTSAGQQPADVTLRGSVDGTAPVDIHGKVNPLAPTAFVDLSAKANDIELT
NLTPYSAKYAGYPITKGKLTVDLHYLLDQGKLSADNHIFIDQLTFGDRVESKDATNLPVR
LAVALLKNSRGEIDVRVPVSGSLDDPQFSLGGVIVRAFVNLIVRAVTAPFSLLANAFGGG
GEELGYIEFDPGTAAISQASMAKIDKLATALKDRPALKLDIIGRVDPATDRDGLRREAVN
RQIREQKLKDAGDTAEADNTVKPEEMDKYLERAYKAAKFPKPRNAIGLAKSLPPDEMRKL
METNVQVTDADLHELAQRRANAVHVALAERVEPARLFVVAPKLDAEGIKDKGKTTRVDFA
LK