Protein Info for UW163_RS16010 in Ralstonia solanacearum UW163

Annotation: lipopolysaccharide assembly protein LapB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13432: TPR_16" amino acids 46 to 90 (45 residues), 22 bits, see alignment 8.7e-08 amino acids 185 to 234 (50 residues), 19.2 bits, see alignment 6.4e-07 PF13181: TPR_8" amino acids 180 to 213 (34 residues), 12.3 bits, see alignment 7.8e-05 PF14559: TPR_19" amino acids 191 to 246 (56 residues), 28.2 bits, see alignment 8.8e-10 PF18073: Rubredoxin_2" amino acids 384 to 408 (25 residues), 34.3 bits, see alignment (E = 6.9e-12)

Best Hits

KEGG orthology group: None (inferred from 99% identity to rsc:RCFBP_20569)

Predicted SEED Role

"Heat shock (predicted periplasmic) protein YciM, precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (425 amino acids)

>UW163_RS16010 lipopolysaccharide assembly protein LapB (Ralstonia solanacearum UW163)
MDFDLWWLLAIPLVFGLGWAAARLDARQLLTEQASLPRSYFKGLNFLLNEQPDKAIDAFI
EVARLDPETTELHFALGSLFRRRGETERAIRVHQNLVNRPDLPPNERDHALYELGQDFLR
AGLLDRAEESLRMLMDGTFAEPAKRVLLELYEVEKEWRKAIDAARELQTLQGQDYTVQIA
QFCCELAQESLQRKDVATAVEWLERALQENPKNVRATIQLGDVALGKGETDGAIKRWRSI
EQQNPAFLPLVAERLMKAYVQLGRAAEGLAWLRSKMDARLGPELLDVVYRYELDVHGIDD
AVALMREQIRRQPSLMALTRLVEAEATRASEAVSHEVATAVAPVGDSALADPVEAGSNAD
IQRAQDLGAIRDLLQSRTRNLARYTCQECGFRARLFYWQCPGCNRWETYAPRRTETLGGS
GGASM