Protein Info for UW163_RS12950 in Ralstonia solanacearum UW163

Annotation: ATP-dependent RNA helicase HrpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1331 TIGR01967: RNA helicase HrpA" amino acids 46 to 1019 (974 residues), 1433.6 bits, see alignment E=0 PF00270: DEAD" amino acids 80 to 231 (152 residues), 27.9 bits, see alignment E=5.5e-10 PF00271: Helicase_C" amino acids 287 to 408 (122 residues), 43.8 bits, see alignment E=8.4e-15 PF04408: HA2_N" amino acids 472 to 498 (27 residues), 30.4 bits, see alignment (E = 9.6e-11) PF21010: HA2_C" amino acids 499 to 552 (54 residues), 46 bits, see alignment (E = 1.9e-15) PF07717: OB_NTP_bind" amino acids 623 to 703 (81 residues), 47.1 bits, see alignment 6.6e-16 PF11898: DUF3418" amino acids 717 to 1327 (611 residues), 724.8 bits, see alignment E=2.6e-221

Best Hits

KEGG orthology group: K03578, ATP-dependent helicase HrpA [EC: 3.6.4.13] (inferred from 58% identity to azo:azo0716)

Predicted SEED Role

"macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif."

Isozymes

Compare fitness of predicted isozymes for: 3.6.4.13

Use Curated BLAST to search for 3.6.4.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1331 amino acids)

>UW163_RS12950 ATP-dependent RNA helicase HrpA (Ralstonia solanacearum UW163)
MSDSHVSPPSAAPSRPSPNDASRPARQPGPADAGGRRPRRQKPTPEALAAALEARRARAN
AVPPIAFPEALPVSARRDEIAQAIAAHQVVIVSGETGSGKTTQLPKICLSIGRGIGAGGT
GLIGHTQPRRIAATSTAKRIAQEIGSPLGEHVGYQVRFNDTLSAGASVKLMTDGILLAET
QNDPLLRAYDTIIIDEAHERSLNIDFLIGYLKQLLPRRPDLKVIITSATIDAQRFAEHFA
GLNGQKGPAPVIEVSGRLYPVEVRYRPVQRDEKDKERDLYDGIVDAVDELAREGAGDVLI
FLPGEREIREAAEALRKHHPAHTEILPLFARLSVQEQERVFRPSNARRIVLATNVAETSL
TVPGIRYVVDTGLARVKRYSYRNKVEQLQIEPVSQAAANQRAGRCGRVADGVCIRLYEEA
DFIARPRFTDPEILRSSLAAVILRMKALRLTDVEQFPFIEPPLGRAIADGYQLLQELGAV
DDENALTPLGKQVARLPLDPRVARMILAGRDHQCLREMLVIASALSVQDPRERPQELQQQ
ADQAHRQFADEKSEFLGWVKLWKWFEEAVAHKKSNKQLQDQCRSHFLSHLRLREWRDVHS
QLHTTVAEQGWKLNESDPTYEQLHLALLTGLLGNIGVRIEEADGKGREYLGARGIKFFLW
PGSVIARKAGKWVVGGELIETSRLFGRTLARIEPEWVEKVGAHLLKVSWSDPHWEKKAGQ
VMAFERGTLYGLPVYQQRRVHFGPMQPKEARELFIRRALVDGEFETRLPFFAHNQRLVRE
IENLEHKSRRQDVLVDDELIHAFYDSQLPADIHNAVAFEHWYAEAAKASQKLLYLNRDDL
MRHEAAGITTDLFPKTLPIAGIDMGLTYHFEPGSPRDGVTLTVPLYALNQVPAQRAEWLV
PGMLKEKVHLLLKSLPQKLRRHCVPLPDYAAGFVSRVRLGDGDLLDRLIADVREQTGTPL
KRADFKLETLPAHHFMNFKVIDEHGRQLDMGRNLAQLRAELGGRAQQTFQSIAAQDAAVA
GAQGDGAGTKPGKVGKPDAPATPALYAGLTTWNFGALPELLEVRKGSQTLFGYPALVDGG
DHCDVEVFDDPAEAARIHRLGLRRLFALQLREPLKYLEKNIPGLSQMAIQFMNLGTQDEL
RSQILDATLERACLQDPLPTDDATFGARKDESRARLTLLAQEIARLAGAILAEYAQLPRK
LQIAKPFGAAYADIDAQLKALMHKRFIEATPYAQLAHFPRYLKGIALRIDKLKADPTRDA
QRMQEMAPLLQQYQRAEKQLRVQGQGGTDPRMEEFRWMLEELRIALFAQELRTPVPMSVK
RLQKVWESMQR