Protein Info for UW163_RS12900 in Ralstonia solanacearum UW163

Annotation: rhizopine-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF13407: Peripla_BP_4" amino acids 23 to 280 (258 residues), 215.1 bits, see alignment E=2.7e-67 PF13458: Peripla_BP_6" amino acids 39 to 282 (244 residues), 36.9 bits, see alignment E=7.5e-13 PF00532: Peripla_BP_1" amino acids 51 to 293 (243 residues), 53.5 bits, see alignment E=5.2e-18 PF13377: Peripla_BP_3" amino acids 159 to 294 (136 residues), 29.8 bits, see alignment E=1.2e-10

Best Hits

Swiss-Prot: 48% identical to MOCB_RHIML: Putative rhizopine-binding protein (mocB) from Rhizobium meliloti

KEGG orthology group: None (inferred from 98% identity to rsc:RCFBP_20188)

Predicted SEED Role

"Inositol transport system sugar-binding protein" in subsystem Inositol catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (305 amino acids)

>UW163_RS12900 rhizopine-binding protein (Ralstonia solanacearum UW163)
MKRWMAFAAAWLLPLAVFAQTKIGVSISAFDDNFLTLMRQAMQAHAKTLKGVDVQFEDAR
ADVGRQISQVETFISQKASAIIVNPVDTSATARMTEAARRAGIPLVYVNRKPFEKLGNGA
VFVGSDELVAGHLQMEYLARQMGGKGNLAIMQGGLSADAARVRTQGVMDIVKKYPGIKVV
EQQTANWQRNEALNLMSRWLSAGTRIDAVASNNDEMAIGALLAMRQAGISSKTILVAGVD
ATPDGLAEMRRGGLVATVFQDAKGQGRGAVDAAVKMAAGAKDVPPEVLIPFELVTPDNYQ
AFAKR