Protein Info for UW163_RS12735 in Ralstonia solanacearum UW163

Annotation: DUF4115 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 transmembrane" amino acids 138 to 157 (20 residues), see Phobius details PF13413: HTH_25" amino acids 38 to 97 (60 residues), 58.6 bits, see alignment E=4.2e-20 PF13464: RodZ_C" amino acids 294 to 365 (72 residues), 75.9 bits, see alignment E=1.9e-25

Best Hits

KEGG orthology group: None (inferred from 95% identity to rsc:RCFBP_20219)

Predicted SEED Role

"FIG021952: putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (367 amino acids)

>UW163_RS12735 DUF4115 domain-containing protein (Ralstonia solanacearum UW163)
MTERDAANTGDLAAGGASAQPSAASHDRDDALRQIAERLRVGREGQRLTVEDLATRLKVA
PAKLLAVESGDISVLPDMTFAKGLIRTYARVLQVDVDDQLARLNERAQVANIGLRPEGGL
GKSFTDKPSFAARRNGSRWLIGVLVAVVVIGGALAGMDRLKQWLASHVPETAQTPAEPAA
KAAPKAEPGPAAAGAEVSSAPAVTTSPAEAPAASMPTPLTPAAPAEPASGTVTAPLAPPP
TLPRSDTGALAAPDAVAEAVKPAIVAVDASTVSAVPAEAIKPAIGDAGGSALSVRFSGAS
WYEIKDKSGRMLASGLAREGDARDLTGAPPFKVVFGNAESVESLTVSGAPVDIRKYARNR
VARATLP