Protein Info for UW163_RS11125 in Ralstonia solanacearum UW163

Annotation: peptidoglycan-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 970 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details transmembrane" amino acids 510 to 531 (22 residues), see Phobius details TIGR03505: FimV N-terminal domain" amino acids 217 to 289 (73 residues), 91.3 bits, see alignment 2.7e-30 TIGR03504: FimV C-terminal domain" amino acids 926 to 969 (44 residues), 68.4 bits, see alignment (E = 4.2e-23)

Best Hits

KEGG orthology group: K07288, uncharacterized membrane protein (inferred from 90% identity to rsc:RCFBP_11400)

Predicted SEED Role

"Tfp pilus assembly protein FimV"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (970 amino acids)

>UW163_RS11125 peptidoglycan-binding protein (Ralstonia solanacearum UW163)
MRVSQYRRRESSHRSPRWSAVAIAAASLLLIQPVAHAAGFGALHVRSSLGQPLQADIDLT
GVTEEEAQNLVAKLASPDAYQRAGLTYNPIISTLRASLVRQSGGSYVVRVISAQPVAEPF
VDILVDLTWASGRVSRAYTFLLDPAGSSNTPRNFAPTPVVQATTPGMADSAAAPQSQAAA
PATQRAARPARPAARPQADATAADTASGGAYTVQRGDSLYDVASNAVQGQDAVSLDQMLL
ALYRNNPKAFIGGNINRLRTGSVLTVPSAAEAQKVPSREARREVVAQTSGFAGYRSRLAT
AAEANAATDTDSARQQSGSVSARVQDQATPSASERDELRLSKAERAGKAGASAAARDEDL
VAKERALKEMESRVAQLEKNLSEMQRLIEVKNAELAKAANGKPAAGAAPSTAAPAVTAAN
APAPSASAAPAQAPAATAPAAPSSETAAAAPAAAAQAGASAPVSAASAPEAASAPVAAAP
APAAVPKKAPVVVAPQPPVEDESLFSSLLGNPMVLGLGGAAVALLGGLAVYRRRQQKPEQ
AHGFQDSLLSQESTVMAGANSLFGAAGGQSIDTSQHSVFGADFRIGGGNESNEVDPIAEA
DVYIAYGRDVQAEEILREALEQHPERQAIRLKLMEIYANRQDAHGFQTIAEEMLAQVGAA
SSEWAEAAAMGRKFDPANPLYLTVQGDGPHEHAAAEPVTQGHHTGAAAAAAALAGVGAAA
AVESFKPTVTGETTRRGEEWTTLDPGLDPSMPSTKAPHLADLELPLESFPAPAAGEPITA
PAEAAAVFQPHAEPEALSPLELPQQADFGGHAGEAFQPVSAPPLHMDLSDLSLDLNPTPP
AAEAEVEVPAVEEPAPAAVAANSLPSWAMPAELPEAAPQQLDAEPQHQAAAVPQPEEPLT
VMRLDTNLPHTLSAEGGIDGVRDLQIKFDLAKAYIEIGDKEGARELLQEVLDLGDPSFHA
EAQALMRQIG