Protein Info for UW163_RS10910 in Ralstonia solanacearum UW163

Annotation: urease accessory protein UreF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF01730: UreF" amino acids 52 to 198 (147 residues), 131.3 bits, see alignment E=1.8e-42

Best Hits

Swiss-Prot: 95% identical to UREF_RALSO: Urease accessory protein UreF (ureF) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K03188, urease accessory protein (inferred from 98% identity to rsc:RCFBP_11358)

Predicted SEED Role

"Urease accessory protein UreF" in subsystem Urea decomposition

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (243 amino acids)

>UW163_RS10910 urease accessory protein UreF (Ralstonia solanacearum UW163)
MCTAPVAATRITTLMTSATQLTALLHLASPALPVGAFSYSQGLEAAVEARHVHDEASAAR
WIAEGLAVLAACEAPLWLLQYADWQAGRPDAVAERDGWFLATRETRELRLETAQMGWSLA
RLIAQMGWGDPAMRDALATRTTITFPTAFAAAAVAQGIEARDGLTAYGFAWVENQVAAAV
KAIPLGQSAGQRILFGLHAAVGRAAEEAARRAACHPPELSTFSPGLGVLSARHETQYSRL
FRS