Protein Info for UW163_RS10655 in Ralstonia solanacearum UW163

Annotation: RDD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 176 transmembrane" amino acids 35 to 55 (21 residues), see Phobius details amino acids 67 to 83 (17 residues), see Phobius details amino acids 113 to 132 (20 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details PF06271: RDD" amino acids 22 to 170 (149 residues), 95.9 bits, see alignment E=1.3e-31

Best Hits

KEGG orthology group: None (inferred from 97% identity to rsc:RCFBP_11308)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (176 amino acids)

>UW163_RS10655 RDD family protein (Ralstonia solanacearum UW163)
MAATSPAAPAASGGAIDASTVPTLRRRLAAMLYEGLLLFGVLFGATALFLILRAIVPPLA
HTGDVGLQVWGFLALGLYFVGFWRKRGQTLAMQTWRIRLVSADGAPVSLGQAIARYVLAW
IWVAVAVAVIHVSGLSRWAGACVALACVLAWTALAWLDPQRQFLHDRLAGTRLIRD