Protein Info for UW163_RS09730 in Ralstonia solanacearum UW163

Annotation: signal peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1319 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details PF13429: TPR_15" amino acids 527 to 807 (281 residues), 317.5 bits, see alignment E=4.1e-99

Best Hits

KEGG orthology group: None (inferred from 98% identity to rsc:RCFBP_11124)

Predicted SEED Role

"Extracellular Matrix protein PelB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1319 amino acids)

>UW163_RS09730 signal peptidase (Ralstonia solanacearum UW163)
MWSADLAPRERLLSPWLIGTLGGLVALALAMMFPRERLETRLLEGGKVDALSMAYLEAWL
RVRPNDGEFLAVLAAQYVRTGRLDEAEAMLVRMRGLHSKALDREALLLDIAIHEQRAYAL
QPGDPHRKAYLDGLRGLLGQALGYRWNASELEILASQARGLDAGAVAAQFYRLLSKQDPA
HAAQWQSRSAEIALGVGNYRESAAANFAAQAAATSLDERRRYFIGGLKALQAGGLLEDAM
DEAERRVGPLIDDPETLRFLTRLAMACNRADLADRYARRLLHLSWQAVPDEGIALATGTA
RHDWVFAGRPLPLPSPAEAVFLDGIEGVVRRLRGAARIRRVADADRAPAAPSADAQAVAH
GIAPFNAEDYDLAFRVFLGSGNLNDAMRVAEAAVRQRPDLKLWIERAAQVAEWNRQPMVA
LQHWLSYAQATGDDVAWRHVLRLAPALNEDHAYLAAQRHKAGSQPADMKLLDQIVAAYER
LGEPTQGPAYLDSVARGPNRQAVLERYAQLAERAGKDDEAYAGYQRLQKEFGPDARYALK
LANMLYVRDQFEQALAVMQTAARTAAPTDDVYWRTFAQLARLNQRDDLMREAYRQLLIGG
GAMVDDLSAMVEFYDASPIDAGRLAELAYRKDGGTIHLQRALYYYTRAGAFHRVEGLLAS
LTPAQRAAAEQSAGVLAARAEYYRQTGQWAAAMRDLHRAVALPDAGSDVKAALLWSLIDS
GQAAELKRALARWRGDAESDSAYWGAYAAAGLQLADANLALHFLGRQGKSMRNDPLWLLA
YADAREMAGQAEAAWRLRREAWRLLWRGEQPGEGEPAQLEDGARAELRARRATLAQTFGS
GDLAQRLLIELLRDDRRETRAAREGGRAALAGSELGDIDVLPPEPPESPAAARKAARASN
QLVSALAKEAALGWALSQEANDLARAWLLQQYTRGMARPAYAEISIALAERDLQTLNRLL
DDTPDRLPLAARIDANVMTDRLGEAQRLAFNGLATAPDEPQLHQRAEETLLANAQALEPR
ETWYKQAPLTYFESSAAAGTRLTDHYSMLLRATQRNQRSIDSQQLTGVPAQDRSVDWISQ
YRTQDAQWKGTVGWRQGLASFTTFRLDGLLGQTGPVVTELSVGRNQPASETPQLRVGGVK
DLVTVGGNWRLTQRQYVRARVEGDRFYGQDRSFLGSGMVLDGEIGHRFRVEYPDYTIRLT
GTYARYSASGAPGTLLGRLLPAGVPMSVEQFVPRSFAQYGLLFGFGTDYLDRYARAWRPF
LDAGMLRDNRSGWGVQVQVGAAGSVLGNDHLAVYIGHASITRAGTSPMTEIGLRYRWLY