Protein Info for UW163_RS09270 in Ralstonia solanacearum UW163

Annotation: OmpA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 209 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13441: Gly-zipper_YMGG" amino acids 24 to 66 (43 residues), 34.4 bits, see alignment 2.9e-12 PF05433: Rick_17kDa_Anti" amino acids 29 to 68 (40 residues), 25.9 bits, see alignment 1.5e-09 PF13488: Gly-zipper_Omp" amino acids 29 to 69 (41 residues), 30.7 bits, see alignment 4.8e-11 PF00691: OmpA" amino acids 104 to 198 (95 residues), 81.8 bits, see alignment E=7.8e-27

Best Hits

Swiss-Prot: 41% identical to YIAD_ECOLI: Probable lipoprotein YiaD (yiaD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to rsc:RCFBP_11041)

Predicted SEED Role

"Outer membrane protein A precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (209 amino acids)

>UW163_RS09270 OmpA family protein (Ralstonia solanacearum UW163)
MKAKLISVSLIALLAAGCATQQQNQTLAGTGVGAAVGAGIGALVGNSKGAAIGGALGAAG
GAAVGYNWNAIKSKLTGDTAGTGTQISEQPDGSLKLNIPSQVSFDTDSAVIKPSFRGPLD
SVAETLTQHPELAASVVGHTDSTGNPNYNMSLSQRRAQSVTSYLTDRGVARNRLTAEGRG
QTQPVGDNATEAGRAQNRRVEIYLKPIQG