Protein Info for UW163_RS08480 in Ralstonia solanacearum UW163

Annotation: Cys-tRNA(Pro) deacylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 163 transmembrane" amino acids 138 to 154 (17 residues), see Phobius details TIGR00011: Cys-tRNA(Pro) deacylase" amino acids 10 to 155 (146 residues), 161.2 bits, see alignment E=7.7e-52 PF04073: tRNA_edit" amino acids 37 to 148 (112 residues), 91.7 bits, see alignment E=1.8e-30

Best Hits

Swiss-Prot: 34% identical to YBAK_HAEIN: Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK (ybaK) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 99% identity to rsc:RCFBP_10851)

Predicted SEED Role

"Transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (163 amino acids)

>UW163_RS08480 Cys-tRNA(Pro) deacylase (Ralstonia solanacearum UW163)
MSKSRHVSETPATQFLKAHGVAYTEHTYDYVDHGGTTESSRQLGVDEHHVVKTLVMEDEQ
AKPLIVLMHGDRSVSTKNLARQTGRKSVQPCKPEVAQRHSGYLVGGTSPFGVRKAMPVYV
EASVLALERIYINGGRRGFLVGLAPAVLTALLHAQPVHCANPD