Protein Info for UW163_RS08190 in Ralstonia solanacearum UW163

Annotation: rhombosortase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 59 to 77 (19 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 108 to 128 (21 residues), see Phobius details amino acids 140 to 158 (19 residues), see Phobius details amino acids 173 to 195 (23 residues), see Phobius details TIGR03902: rhombosortase" amino acids 32 to 193 (162 residues), 139.1 bits, see alignment E=5.6e-45 PF01694: Rhomboid" amino acids 41 to 194 (154 residues), 31.6 bits, see alignment E=8.4e-12

Best Hits

KEGG orthology group: None (inferred from 97% identity to rsc:RCFBP_10792)

Predicted SEED Role

"PROBABLE TRANSMEMBRANE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (206 amino acids)

>UW163_RS08190 rhombosortase (Ralstonia solanacearum UW163)
MSTRAHVIRTWGACAGVFAVSAAFSFVPWLHAVGLYQRDAVRAGQWWRVITAMWVHLDAW
HWLADGMAAVGLILLLARVLRPDAILAVLVACGVLVQVALLNQMSVQWYGGLSGALHGLA
AWGGLRLLRPSDEDAGADRPSRWIGSLLCLGVLVKVWLEQSWLSPIAYDPHWGFGVVRIA
HALGAGSGLLLWVLGEWRAQGRRARG