Protein Info for UW163_RS08090 in Ralstonia solanacearum UW163

Annotation: type 4 fimbrial biogenesis PilY1 signal peptide

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1070 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details

Best Hits

KEGG orthology group: K02674, type IV pilus assembly protein PilY1 (inferred from 97% identity to rsc:RCFBP_10773)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1070 amino acids)

>UW163_RS08090 type 4 fimbrial biogenesis PilY1 signal peptide (Ralstonia solanacearum UW163)
MRLSARTALAAVTPVLAVLALAGPAAAEDIDLYTGLTPQSGKPNVLLLMDNAAAWDASAT
FTCAISGVVGSNNVGKDVGAEQCALYSAVQSFKNNASLLGNLNLGLMMFGTGSNVGGQFR
IPSAAPYGLQLMDTNGINNFLSSVQTIDRLADKANGSQVGGGMQEAWAFFAGKTGLSGTK
YTSPITNPCQRNYVIYIANAVKNGKPQDTGQNAFNALVSAGATSAQQQQITIPTNSKYQA
NWGDEWARFMYQTDLSGSSSSNSQPQNIITYTISVTDGNNPDYVAFDSSMATNGGGKTYV
VQLGDVDGLKNALLEIFNEVQAVNSVFASVSLPAAVNAQGQFLNQVYIGMFRPDASASPR
WMGNLKQYQLGYDSTGTIVMQDSLGKSAISSSGTGFITPGAVSFWTAEPPLSYGTSGYGS
SSVSKWPANGFWANSPSGAGWNLDSADGEVVEKGGAGEMLRAQYLTDQSSRVLYTCNGAG
TCPTSSAMPLFNTANTWLAGSSGLAAINSGTGGAATISASEQTNLINWVRGRDVYAMDGS
TVAGQEAETGPGSPVTIRPSVHGDVLHSRPVVVNYGGTTGVVVFYGANDGVFHAINGNQS
AGINGVRPGGELWGFVPPEFLGKLSRLYTNAPEIKLSTTPSGISPTPTPRDYFFDGSTTV
MQDQRNASSPRTVIYLTARRGGSLIYAIEVTDPLNPRYLWSRTNSDIPEMGQTWSKPRLM
RVQGYSNPVLIMGAGYDTAEDSDPSPGVDSAGRGVIVLDAYTGVPVWSGLANCTGVAGVC
VKVTGLTRSIPSDVAVLDRSGTGYIQVAYVGDVGGNLWRVDFQGSGGNTPANWTMTQLAT
LGGAANTNNARKFFYAPDIVSTTGYNALMAGTGDREHPLYSASTTPGTAYNVVNRFYMIK
DPNIGTMPSTWTPITEANLVDLSSTTKTYDGTGSGYYITLPNPGEKVVNAPLTVAGYTYF
GTNTPAVPQAGMCYPNLGVARDYAVGFLTGTGQNTNRSVTLDGGGFPPSPVYGLVSITNG
SGTTSLTPILFGGGNQTGAGGGSALQAHQVVISGAGKRKRTYWYSESDKH