Protein Info for UW163_RS05225 in Ralstonia solanacearum UW163

Annotation: DNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 153 PF12728: HTH_17" amino acids 83 to 130 (48 residues), 47.6 bits, see alignment E=7.5e-17 TIGR01764: DNA binding domain, excisionase family" amino acids 83 to 129 (47 residues), 56.9 bits, see alignment E=1e-19

Best Hits

KEGG orthology group: None (inferred from 84% identity to rsl:RPSI07_0208)

Predicted SEED Role

"elements of external origin; plasmid-related functions non-bacterial functions"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (153 amino acids)

>UW163_RS05225 DNA-binding protein (Ralstonia solanacearum UW163)
MNVSAITKVQPSEEDVALAREARRTLEAVLKAGAGTRQVDFRDGSGRVQTVRMPASALQL
LQDVLDQIEKGCAVSIVPTHTELTTQEAAQMLGVSRPFFVQMLERGDIPFHKIGTHRRVR
YRDVVDYKKRLDAQRHQALEELATQAQALDMGY