Protein Info for UW163_RS04905 in Ralstonia solanacearum UW163

Annotation: oligopeptide transporter, OPT family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 677 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 79 to 99 (21 residues), see Phobius details amino acids 105 to 126 (22 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details amino acids 197 to 218 (22 residues), see Phobius details amino acids 221 to 248 (28 residues), see Phobius details amino acids 271 to 294 (24 residues), see Phobius details amino acids 322 to 342 (21 residues), see Phobius details amino acids 354 to 378 (25 residues), see Phobius details amino acids 388 to 408 (21 residues), see Phobius details amino acids 420 to 441 (22 residues), see Phobius details amino acids 462 to 482 (21 residues), see Phobius details amino acids 499 to 519 (21 residues), see Phobius details amino acids 526 to 545 (20 residues), see Phobius details amino acids 557 to 583 (27 residues), see Phobius details amino acids 610 to 632 (23 residues), see Phobius details amino acids 651 to 671 (21 residues), see Phobius details TIGR00728: oligopeptide transporter, OPT superfamily" amino acids 13 to 297 (285 residues), 207 bits, see alignment E=5.9e-65 amino acids 326 to 629 (304 residues), 160.3 bits, see alignment E=7.9e-51 PF03169: OPT" amino acids 16 to 629 (614 residues), 353.4 bits, see alignment E=1.4e-109 TIGR00733: oligopeptide transporter, OPT family" amino acids 16 to 631 (616 residues), 698.9 bits, see alignment E=5.2e-214

Best Hits

KEGG orthology group: None (inferred from 97% identity to rsc:RCFBP_10171)

Predicted SEED Role

"oligopeptide transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (677 amino acids)

>UW163_RS04905 oligopeptide transporter, OPT family (Ralstonia solanacearum UW163)
MQSLPTVHIAAKPLPELTLRGMILGAIITVIFTASNVYLGLKVGLTFSSAIPAAVISMAV
LRAIGGTNILENNMVQTQASAAGTLSSVIFILPGLVMIGHWQGFPFWLTFGVCMAGGMLG
VVFTIPLRHAMVVETDLPYPEGVAAAEILRVGSGHAADDDAVPAATGLRDIATGGVVAAV
VAFATSGLRVLGEGASWWFAAGASVIRLPLGFSTALLGAGYLIGVVAGLAMLVGLVIAWG
ITVPYLTAITPMPAGKSLSAFGTDVWRTQVRFIGAGVIAVAAVWTLATLIGPVVRGVRRS
FGSLRPPSGEVPRTDRDMAPRWILLVTLAMVAVLAITFAAFLAPATLSPGSRGLLVACAV
LFAVVFGFLVAAACGYMAGLVGSSTSPISGVGIIAITLVSLLLLAVGADRGLLGSPEAGR
LGIALAIFTTSAVLAVATISNDNLQDLKTGWLVGATPWRQQVALLIGCVAGAAVISPVLE
LLYNAYGFSGALPRPGMDAAQALSAPQATLMTAIATGIFTHQLQWTMVIAGIGIGAALIA
IDWALKQRGGVARLPVLAVGIGIYLPPTVSAPLVVGAVLAWGIDRILARRARAAGVPFER
YAKVPNRHGVLLASGLIVGESLVGVLLAAVIGASGKEAPLALVGASFEGTAQWLGLIVFA
LVCWAFARRILAVRPAH