Protein Info for UW163_RS04845 in Ralstonia solanacearum UW163

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 transmembrane" amino acids 230 to 249 (20 residues), see Phobius details amino acids 255 to 273 (19 residues), see Phobius details PF00126: HTH_1" amino acids 13 to 63 (51 residues), 41.9 bits, see alignment 7.8e-15 PF03466: LysR_substrate" amino acids 96 to 294 (199 residues), 82.4 bits, see alignment E=3e-27

Best Hits

KEGG orthology group: None (inferred from 98% identity to rsc:RCFBP_10159)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (297 amino acids)

>UW163_RS04845 LysR family transcriptional regulator (Ralstonia solanacearum UW163)
MHAQTQYRLSAADLEVVLAMARTGTLAAAGERLGVDASTVFRSLQRIERGLGQALFARSR
TGYLANELAQSLAERAEQVEAALEAARSAANMAPDPVAGTVRITTTDTILHGLVAPALMA
LHAQHPGLVYDLHVGNELASLTRRDADIAVRATRRPPPHLVGKRIGPVRVGLYGGKGSAF
QHDVDYADVEAGRVPWIGVDDAIPDHPSVVWRKRHFSKAVPAYRVNSLQTVMEMVGLGLG
VGILPVFLADMRSDLVPLLGVLYAGQTELWLLMHPESRHLRRIATVYGHLAQVLRLP