Protein Info for UW163_RS04690 in Ralstonia solanacearum UW163

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 23 to 24 (2 residues), see Phobius details amino acids 31 to 50 (20 residues), see Phobius details amino acids 60 to 79 (20 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 111 to 133 (23 residues), see Phobius details amino acids 159 to 179 (21 residues), see Phobius details amino acids 209 to 231 (23 residues), see Phobius details amino acids 244 to 270 (27 residues), see Phobius details amino acids 278 to 295 (18 residues), see Phobius details amino acids 300 to 317 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 34 to 275 (242 residues), 112.8 bits, see alignment E=8.5e-37

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 98% identity to rsc:RCFBP_10125)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (330 amino acids)

>UW163_RS04690 branched-chain amino acid ABC transporter permease (Ralstonia solanacearum UW163)
MNHSSSFKFILYGLLLAALIAAPLAGAYPVFVAKVLCFVLFASAFNLLLGYTGLLSFGHA
AFFGGAGYVAGYLMTSPYLHVTPEVGLLAGTAAGALIGLVVGLLAIRRQGIYFAMITLAL
AQMFYFFCLQAPFTGGEDGLQGVPRGKLFGVLDLSSDLTLYYFVVVVVVVAFLVIVRTIH
SPFGQILKAIKENEPRAISLGYDTDRFKLLAFVLSAALSGLAGALKTLVLGFETLTDVHW
AMSGSVILMTLVGGLGILSGPILGAALVIALENKLGDIGTFLAGVTGVDGFNVLGESVTT
VTGAIFVICVLTFRRGIMGEIAARVPWLRR