Protein Info for UW163_RS04385 in Ralstonia solanacearum UW163

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 44 to 66 (23 residues), see Phobius details amino acids 78 to 99 (22 residues), see Phobius details amino acids 106 to 127 (22 residues), see Phobius details amino acids 136 to 158 (23 residues), see Phobius details amino acids 164 to 182 (19 residues), see Phobius details amino acids 219 to 241 (23 residues), see Phobius details amino acids 253 to 270 (18 residues), see Phobius details amino acids 282 to 299 (18 residues), see Phobius details amino acids 305 to 324 (20 residues), see Phobius details amino acids 342 to 365 (24 residues), see Phobius details amino acids 376 to 394 (19 residues), see Phobius details PF07690: MFS_1" amino acids 16 to 217 (202 residues), 104.8 bits, see alignment E=7.2e-34 amino acids 220 to 395 (176 residues), 60.7 bits, see alignment E=1.8e-20 PF00083: Sugar_tr" amino acids 51 to 178 (128 residues), 27 bits, see alignment E=3.2e-10

Best Hits

KEGG orthology group: None (inferred from 98% identity to rsc:RCFBP_10064)

Predicted SEED Role

"FIG00976637: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (423 amino acids)

>UW163_RS04385 MFS transporter (Ralstonia solanacearum UW163)
MPTLAPQRERRLLWLLALTQFTIIMDFMVMMPLGPQIMHTFGIGPAAFATAVSAYSWCSG
ASGLLAATYIDRFDRRRLLLVVYALFSLSNLACALASTFPLLLAARAFAGLSGGVLGSVI
LAIVSDVIPPARRGAATGVIMSSFALAAVAGVPIGIALGAHLGWAAPFFLLTALTAVFWL
GARRTVPSLTEHLREGGDSLGRILGGLWQLLTHPHHLRAFVLTLVMMTAHMMVIPFISPV
LVANHGVAPQDLSWLYVAGGAATFFTSRAVGRLADRYGRRRAFVVAALLSCIPVLVMTHL
PDWPFIGMLLFFPCFMVVLSSRMVPMQALMTTVPAPQVRGAFLSANSAVMSLGTGCGAWL
GGLLLSTGAGGHIDGYGFNGWVAVAASLFCVLWVRNVKGSDVHGDPSMHAQRPASAQNEA
ERA