Protein Info for UW163_RS03945 in Ralstonia solanacearum UW163

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 530 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF00496: SBP_bac_5" amino acids 76 to 444 (369 residues), 320.8 bits, see alignment E=6.4e-100

Best Hits

KEGG orthology group: K02035, peptide/nickel transport system substrate-binding protein (inferred from 94% identity to rsl:RPSI07_3334)

Predicted SEED Role

"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) or Sex pheromones in Enterococcus faecalis and other Firmicutes (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (530 amino acids)

>UW163_RS03945 ABC transporter substrate-binding protein (Ralstonia solanacearum UW163)
MPVLHLLRAASAVVALSVAMALAPAAVHAQPPSTLVIGLSGDITSLDPHFHNVTPNANVA
EHLFETLIAKDDKMRLKPGLATSWRAVSDTVWELKLRPGVQFHDGSEFTSADVVYSLARP
ATIKNSPSPYTIYTRGFKEVTAVDRLTVRITTNGPYPLVPNDLSTLYIVSKKAAEKAGPD
DFNNGRALIGTGPYKFVSFTKGDRLELARNDAYWGKKPQWDHVTLRILTADASRVAALLA
GDVQVIEGVPPPDVRKLAANPAVSVFKMPAFRLMYLHMDSARDASPFVTDKAGRPLAKNP
LRDVRVRQAISLAISRQAIVDRVMEGAAEPTGQLVNSTLFGHVPDLKAPVTDVAAAKKLL
AQAGYPDGFGITLHATNNRYVNDNRVAQAIASMLARVGIAAKVEAMPSATFFTRANKLEF
SFLLAGWGADTGEASSSLKALLATYDPARGWGASNRGRYSNAALDAKLAEALQTLDDARR
EKLLQEATEIGMREAGVIPLYFNINVWAARKDYTVVPHLDDRTHAFEVTR