Protein Info for UW163_RS03250 in Ralstonia solanacearum UW163

Annotation: chromate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 87 to 110 (24 residues), see Phobius details amino acids 117 to 139 (23 residues), see Phobius details amino acids 150 to 181 (32 residues), see Phobius details amino acids 225 to 246 (22 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details amino acids 308 to 327 (20 residues), see Phobius details amino acids 335 to 358 (24 residues), see Phobius details amino acids 375 to 398 (24 residues), see Phobius details amino acids 405 to 423 (19 residues), see Phobius details amino acids 429 to 447 (19 residues), see Phobius details PF02417: Chromate_transp" amino acids 17 to 181 (165 residues), 154.5 bits, see alignment E=1.4e-49 amino acids 256 to 441 (186 residues), 120.5 bits, see alignment E=3.8e-39 TIGR00937: chromate efflux transporter" amino acids 23 to 399 (377 residues), 239.3 bits, see alignment E=5.2e-75

Best Hits

KEGG orthology group: K07240, chromate transporter (inferred from 75% identity to del:DelCs14_3656)

Predicted SEED Role

"Chromate transport protein ChrA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (448 amino acids)

>UW163_RS03250 chromate transporter (Ralstonia solanacearum UW163)
MTAEPPLSAPPAPTRAEAFRYWLKLGFISFGGPAGQIAIMHEELVERRRWISEARFLHAL
NYCMVLPGPEAQQLATYIGWLMHRTWGGVVAGGLFVLPSLLVLIALSYIYARFGQVPAVA
GVLYGIKPAVTAIVVSAAWRIGSRALRNAWLWSIAAAAFVAIFAFAVPFPAIVLAAALIG
IAGGRLSPRTFQTGAGHAGHAARGAPALIDDDTPTPPHARFTWRYFARVLLFFLLLWTVL
IGALAWRFGWHGALTQMGVFFTQAALLTFGGAYAVLPYVFQGAVEHYHWLTAPQMIDGLA
LGETTPGPLIMVVAFVGYLGGWSAAAFGPDAPAASAALGATVATVFTFLPSFLFILLGGP
FVESTHGNLRFTAPLSAITAAVVGVIVNLAVFFAVHVLWPDGWGGHFDGVSALIGLAAGV
ALFRFRVGVIPVIVGCGAAGLAIRLLAA