Protein Info for UW163_RS03240 in Ralstonia solanacearum UW163

Annotation: LysE family translocator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 211 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 40 to 59 (20 residues), see Phobius details amino acids 65 to 88 (24 residues), see Phobius details amino acids 118 to 142 (25 residues), see Phobius details amino acids 154 to 178 (25 residues), see Phobius details amino acids 190 to 208 (19 residues), see Phobius details PF01810: LysE" amino acids 15 to 202 (188 residues), 91.1 bits, see alignment E=3.5e-30

Best Hits

KEGG orthology group: None (inferred from 98% identity to rsc:RCFBP_21257)

Predicted SEED Role

"Homoserine/homoserine lactone efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (211 amino acids)

>UW163_RS03240 LysE family translocator (Ralstonia solanacearum UW163)
MPLHTWLAFIGASLVILLIPGPTILLVIGDSLANRGRSAWSTVAGVAAGDTTAMAVSLAG
AGALLAASAAAFTVLKLVGGSYLVYLGLKSILNARRLRDDAPEATIPMQQKSARRRFLSA
WTVTALNPKSIVFFVAFVPQFISADQTFLSQGAILLPTFVCLAALNASMYALAARLLANR
LTSAAAQRRFGYTGGAVLVGAGTITLGLQSG