Protein Info for UW163_RS03095 in Ralstonia solanacearum UW163

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 142 PF17775: UPF0225" amino acids 35 to 139 (105 residues), 96.2 bits, see alignment E=8.5e-32

Best Hits

Swiss-Prot: 94% identical to Y270_RALSO: UPF0225 protein RSc0270 (RSc0270) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K09858, SEC-C motif domain protein (inferred from 94% identity to rso:RSc0270)

Predicted SEED Role

"UPF0225 protein YchJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (142 amino acids)

>UW163_RS03095 hypothetical protein (Ralstonia solanacearum UW163)
MTGAVPAPAAACPCGAGAYGRCCGPFHAGDAVPATAEQLMRSRYSAYVLGDTVYLRRTWH
PSTCPADLERSESDAPATRWLGLDVKRHAQQDPTHATVEFVARYKVGGRAHRLHETSRFV
RLDASGAESPQGRWLYVDGDLT