Protein Info for UW163_RS02340 in Ralstonia solanacearum UW163

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 45 to 64 (20 residues), see Phobius details amino acids 76 to 95 (20 residues), see Phobius details amino acids 102 to 122 (21 residues), see Phobius details amino acids 133 to 157 (25 residues), see Phobius details amino acids 163 to 182 (20 residues), see Phobius details amino acids 206 to 229 (24 residues), see Phobius details amino acids 242 to 262 (21 residues), see Phobius details amino acids 270 to 286 (17 residues), see Phobius details amino acids 292 to 310 (19 residues), see Phobius details amino acids 332 to 354 (23 residues), see Phobius details amino acids 360 to 379 (20 residues), see Phobius details PF07690: MFS_1" amino acids 13 to 345 (333 residues), 147.3 bits, see alignment E=5.8e-47 PF00083: Sugar_tr" amino acids 46 to 187 (142 residues), 33.3 bits, see alignment E=2.7e-12

Best Hits

KEGG orthology group: None (inferred from 98% identity to rsc:RCFBP_21066)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (387 amino acids)

>UW163_RS02340 MFS transporter (Ralstonia solanacearum UW163)
MTGLELRAATSLAGIFALRMLGLFMIMPVFAVFAKSLPDGGNTQLVAFAIGVYGLTQAVL
YIPYGWLSDRFGRKPVIVTGLLIFAVGSLVAAFSHSVAGIAVGRAIQGAGAISSAVIAFV
ADLTREEHRTKAMAMIGGSIGVSFAVAIVSAPVIFRWVGMPGMFLAIGVLAVIAIGVVLW
VVPDAPRPPVHVSAPFREVLRNPELLRLNFGVFVLHATQTALFVVLPHMLEAAGLPVDSH
WKIYLPVMGVSFVLMVPAIIAAEKRGKMKAVLLSAVALVMVAQLALGEAQPTLAALTVAL
LVYFLGFNVLEASQPSLVSKYAPGVRKGAAMGVYNTTQALGLFAGGAGGGWILLHAGQHA
VFFTCAGLAAAWLIIAGPMRMPALRRH