Protein Info for UW163_RS02165 in Ralstonia solanacearum UW163

Annotation: FAD-linked oxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1348 PF12447: DUF3683" amino acids 19 to 143 (125 residues), 179.8 bits, see alignment E=5.8e-57 PF01565: FAD_binding_4" amino acids 193 to 338 (146 residues), 85.6 bits, see alignment E=9.5e-28 PF02913: FAD-oxidase_C" amino acids 461 to 576 (116 residues), 24.5 bits, see alignment E=7.1e-09 amino acids 727 to 815 (89 residues), 60.5 bits, see alignment 7.2e-20 PF13183: Fer4_8" amino acids 859 to 938 (80 residues), 31.2 bits, see alignment 9e-11 PF02754: CCG" amino acids 1069 to 1158 (90 residues), 28.8 bits, see alignment 3.8e-10 amino acids 1195 to 1268 (74 residues), 16.7 bits, see alignment 2.3e-06 PF11880: DUF3400" amino acids 1304 to 1348 (45 residues), 81 bits, see alignment (E = 1.2e-26)

Best Hits

Predicted SEED Role

"FAD/FMN-containing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1348 amino acids)

>UW163_RS02165 FAD-linked oxidase (Ralstonia solanacearum UW163)
MNAPLLIDAKLAAQDAAPRLREIPYNYTSFSDREIVIRLLGESAWQILDELRGERRTGRS
ARMLYEVLGDIWVVRRNPYLQDDLLDNPKRRQMLIDALNHRLAEIEKRRTADQTAHNDPE
GDERARRVEQLVAHARRAVKAFQDEFAQVYDLRRRAQKVLGRVTAKDNIKFDGLSRVSHV
TDATDWRVEYPFVVLTPDTEEEIAGIVKGCFELGLTIIPRGGGTGYTGGAVPLTPFSAVI
NTEKLERLDAVEQTDLPGVDHPVATIYSGAGVVTRRVAEAAEKAGLVFAVDPTSIDASCI
GGNVAMNAGGKKAVLWGTALDNLAWWRMVDPDGNWLEVQRLNHNLGKIHDAPVVTFELKW
FDGNAPVGAKLLRTETLTIEGRTFRKEGLGKDVTDKFLAGLPGVQKEGCDGIITSARWIL
HRMPKSTRTVCLEFFGQARDAIPSIVEIKDYLDAETKKPGGAILAGLEHLDERYLRAVGY
ATKSKRNAFPKMVLIGDIVGDDDDAVARATSEVIRLANGKSGEGFVAVSPEARKKFWLDR
SRTAAIARHTNAFKINEDVVIPLNRMGEYTDGIERINIELSIKNKLKLADALLAFFARND
LPLGRTDDANEIPSAELLEDRVQQAQQLLRATRARWQYLLDHLDTPVNAARASLIGLGLG
YLAQTVDERLQVQPDANLFHLLQDRTIRVSWKAEIRAELRKIFNGGEFKPILDEAQAIHK
QVLRGRVFVALHMHAGDGNVHTNLPVNSDDYDMLQDAHKAVARIMTLARSLDGVISGEHG
IGITKLEFLTDDEIADFAAYKRRVDPNGRFNKGKLLRDPNDPQAVAADLRNAYTPSFGLM
GHESIIMQQSDIGAISDSIKDCLRCGKCKPVCATHVPRANLLYSPRNKILATSLLIEAFL
YEEQTRRGVSVKHWEEFADVGDHCTVCHKCATPCPVKIDFGDVSMNMRNLLRKMGQKKFN
PGTAASMFFLNATNPETINLTRKVMIDWGYKAQRLGNDILKKFAKKQTAHPPATVGKPAV
REQVIHFINKKMPGNLPKKTARALLDIEDNEIVPIIRNPQTTTPDSEAVFYFPGCGSERL
FSQVGLATQAMLWHAGVQTVLPPGYLCCGYPQRGNGQFDKAEKIVTDNRVLFHRVANTLN
YLDIKTVVVSCGTCYDQLAGYEFDKIFPGCRIIDIHEFLLEKGVKIDGVQGVRYMYHDPC
HTPIKTMDPTKLVNQLMGGNRGADGQTSAIEKNDRCCGESGTLAVTRPDISTQIRFRKEE
EMRKGADKLRQLGQGSGQSGEAGNVFSGDVKILTSCPSCLQGLSRYSEDASVQADYIVVE
MARHVLGETWLQDYVAHANAGGIERVLV