Protein Info for UW163_RS01925 in Ralstonia solanacearum UW163

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 237 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 46 to 66 (21 residues), see Phobius details amino acids 78 to 102 (25 residues), see Phobius details amino acids 120 to 141 (22 residues), see Phobius details amino acids 154 to 180 (27 residues), see Phobius details TIGR00697: conserved hypothetical integral membrane protein" amino acids 18 to 217 (200 residues), 100 bits, see alignment E=7.7e-33 PF02592: Vut_1" amino acids 51 to 210 (160 residues), 168.4 bits, see alignment E=7.5e-54

Best Hits

KEGG orthology group: K09125, hypothetical protein (inferred from 99% identity to rsc:RCFBP_20982)

Predicted SEED Role

"Putative preQ0 transporter" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (237 amino acids)

>UW163_RS01925 membrane protein (Ralstonia solanacearum UW163)
MTAVPPPSRSFRYYDFVMAAFVTVLLCSNLIGAAKAAQVTLPVIGPVTFGAGVLFFPISY
IFGDILTEVYGYGRDRRVVWAGFGALIFASFMSLVVLALPVAPFMADYQKSLHDVFGNTW
RIVTGSLIAFWCGSFANSYTLAKMKIWSEGKWLWTRIVGSTVVGEAVDSSLFYVIAFYGI
WPHEQVLRVAIAQYILKTGWEIVATPLTYRIVAFLKRAEREDYYDRDTDFTPFRLKV