Protein Info for UW163_RS01485 in Ralstonia solanacearum UW163

Annotation: peptidase M48

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 568 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF01435: Peptidase_M48" amino acids 150 to 323 (174 residues), 106.7 bits, see alignment E=6.8e-35

Best Hits

KEGG orthology group: None (inferred from 97% identity to rsc:RCFBP_20913)

Predicted SEED Role

"Exported zinc metalloprotease YfgC precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (568 amino acids)

>UW163_RS01485 peptidase M48 (Ralstonia solanacearum UW163)
MTLSLFRPGARKVTAAVLLMTWLAPLPPPALAQPASAPAVPARPNLDVGSAAAADQVQSN
LNRSVQIGRQSPYLQKETTIIDAPTYELPDMGDPSTAALSPEMERRLGDRVMRQIRRDPD
YVPDPLLSDYLNDIGYRLIESARRQHVAGSTSASSFELFAVRDPGINAFALPGGYIGVNT
GTLVATDSESELASVLGHEIGHVLQRHIARGIDKSGESMWIALASILLAGLAATKSGDAA
QALAVGGQAAAVSNQLAFSRGAEREADRVGFTLLTGAGYNPDGMPDFFRRLQRVTSIADT
GVVPGYARTHPLTGERIADMEDRARGLPHPLQPHRPEFGFAKARARVLQEMSTSAYLDVR
NAMRSQLASAPDAPVEKRAALWYGIAVAEQMAGQLDAAEQALLEARRLYGNIPGITSGSP
NLDVTAIELVRAHHRVPEALTMARAALTAYPMSRAVGITYAQTLLAAGRVDDAIPYLRDK
AREDTAQPIWWDLLAHAYADQGKRVEQHRALAEKYARDGAWGAAVEQLKLARDAGDADFY
TLSEVDARLHQMERQYREEKQEEKALPK