Protein Info for UW163_RS00300 in Ralstonia solanacearum UW163

Annotation: NUDIX hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 193 PF00293: NUDIX" amino acids 44 to 147 (104 residues), 54.3 bits, see alignment E=7.2e-19

Best Hits

KEGG orthology group: None (inferred from 97% identity to rsc:RCFBP_20606)

Predicted SEED Role

"Nudix hydrolase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (193 amino acids)

>UW163_RS00300 NUDIX hydrolase (Ralstonia solanacearum UW163)
MSFDYRFCPQCATPLVEQHAGGRLRIACPAPDCGFVHWNNPLPVLAAVVEYRGQMFLARN
ALWPEGMFALVTGFLERDETPEKGIARELKEETSLDARSVSLIGVYEFIRKNELIIAYHV
VADGEIALSEELAEYRLLPFEQVRPWTAGTGYAVADFLTARGLPVSYIDLRTGAPAEPPP
RHWQPDGTATITA