Protein Info for UW163_RS00085 in Ralstonia solanacearum UW163

Annotation: terminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 655 PF05876: GpA_ATPase" amino acids 43 to 288 (246 residues), 347.5 bits, see alignment E=7.1e-108 PF20454: GpA_nuclease" amino acids 298 to 603 (306 residues), 325.3 bits, see alignment E=5.2e-101

Best Hits

KEGG orthology group: None (inferred from 91% identity to rso:RSc0853)

Predicted SEED Role

"Phage terminase, large subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (655 amino acids)

>UW163_RS00085 terminase (Ralstonia solanacearum UW163)
MLVADYEGATEIERAWHEGLTPDPLLTVSEWADRHRMLSSKASAEPGRWRTNRTPYLRAI
MDCLSPTSAIERVVFMKAAQLGATEMGSNWIGYVIHHAPGPMMAVWPTVEMAKRNSKQRI
DPLIEESPALAERIAPARSRDSGNTILAKEFRGGVLVMTGANSAVGLRSMPVRYLFLDEV
DGYPLDVEGEGDAISLAEARTRTFARRKIFIVSTPTISGASTIEREYEASDQRRYFVPCP
HCDHRQWLRFEQLRWTQDEPDTVAYICEACEEPIHEHHKASMLEQGEWRAMAEAVGRTAG
FHLSSLYSPVGWRSWRDIAAAWESAVSKESGSAAAIKTFRNTELGETWVEEGEAPDWQRL
LERREDYPIGTVPAGGLLLSAGADVQKDRIEVSVWAFGRGKVSWLVEHRVLMGDTARDGV
WKRLAELVDEQWTHASGASMPLARIALDTGFATQEAYAFVRACRDARVMAVKGVARGAAL
IGTPTAVDVLRNGKKLRRGIKLFTVAVGIAKLEFYNNLRKAADVAEDGETIVFPTGFVHL
PKVDAEYLQQLCAEQMITRRDRNGFPIREWQKMRERNEALDCYVYARAAASSAGLDRFEE
RHWRELERQLGLAPPPDVPPTTESLSPTDATARGGIAVSGGRKSSRRVIKSRWLS