Protein Info for RPSI07_RS22735 in Ralstonia solanacearum PSI07

Annotation: sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 178 to 198 (21 residues), see Phobius details PF05227: CHASE3" amino acids 37 to 166 (130 residues), 107.8 bits, see alignment E=6.7e-35 PF07730: HisKA_3" amino acids 247 to 313 (67 residues), 55.7 bits, see alignment E=9.1e-19 PF02518: HATPase_c" amino acids 355 to 446 (92 residues), 58.4 bits, see alignment E=1.3e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_3124)

Predicted SEED Role

"Signal transduction histidine kinase, glucose-6-phosphate specific"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (475 amino acids)

>RPSI07_RS22735 sensor histidine kinase (Ralstonia solanacearum PSI07)
MRSSLRSTLLLAGGILLTLGVLIASETGNIRLSQGYRQVIQSQQAETAINELLAELVNAE
AGQRGFLLTGKDEYLDPYNKAIPHIHALMAEIRDHYANDPEALKLFSDTALQVSRKLTEM
ELTLIYGKRDLEVALDLIRTDFGKASMEAVRQGLDRLRQREIGTVARSLEHAERDLALSR
YGIALITAVNIILLVVLGMQHAKRLAATEQERDKLEEESQKLDRMVRERTRQLSDLAAHL
QRVTEDEKTRLARELHDELGALLTATKMDLHWLRSRITASEPAVADKITRVMAHVDQGIQ
IKRRLIEDLRPTILLNLGLAEALTQLTEDVGTRNQWQTEVSLPDEMPKLTDDAAIALYRI
VQESLTNASKYAHATVVSVALDVSEEGVRLRVRDNGRGFPADLERRRMVGHHGLLGMEQR
AIALGGTLTIDSMPGGGVTIIVELPSTDAVIDHGDAANGPVAGDLPLAGKGNALV