Protein Info for RPSI07_RS21895 in Ralstonia solanacearum PSI07

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 34 to 53 (20 residues), see Phobius details amino acids 60 to 77 (18 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 139 to 161 (23 residues), see Phobius details amino acids 167 to 186 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_2938)

Predicted SEED Role

"FIG017861: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (218 amino acids)

>RPSI07_RS21895 membrane protein (Ralstonia solanacearum PSI07)
MGKLTRIARGAAGVLAVVAYQVGAHHAAATPGAHGFGLALAIVPLLAIALAAALRSAHRV
WLLPLWALVCAALWLAREPLARHFEWGLYLEHFSFNLVMAFVFGRTLAAGREPLCTQFAA
IVHGTLTPEVARYTRQITVAWTLFFVGMAAVSTLLFATSPIVTWSTFANYLTLPLAGVMF
VAESACRRFVLPPAQRAGILESVRAYRQSMHARADQTR