Protein Info for RPSI07_RS21235 in Ralstonia solanacearum PSI07

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 transmembrane" amino acids 6 to 33 (28 residues), see Phobius details amino acids 45 to 65 (21 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 109 to 132 (24 residues), see Phobius details amino acids 138 to 164 (27 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details amino acids 201 to 224 (24 residues), see Phobius details TIGR03717: integral membrane protein, YjbE family" amino acids 12 to 191 (180 residues), 221.9 bits, see alignment E=2.5e-70 PF03741: TerC" amino acids 14 to 190 (177 residues), 158.8 bits, see alignment E=6.4e-51

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_2800)

Predicted SEED Role

"Membrane protein TerC, possibly involved in tellurium resistance"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (232 amino acids)

>RPSI07_RS21235 hypothetical protein (Ralstonia solanacearum PSI07)
MALTSSAFWFALGSIILTNIVLSGDNAVVIALAARNLPRWQQRQAIFWGSAAAIALRIVL
TALAVKLLALPYLKTIGAVLLVYIGIKLLSDAEDEAAGDHRRRDGLWPAIQTILVADLVM
SLDNVVAVAAAAEKGPPGTAFALLVLGLGLSIPLIVFGSTLLVALMARFPAIVMLAAALL
GYLAGDMLVTDPVDAGWFAQAIPYADVVAGCLGALIVVIVGWWISRRSLRQA