Protein Info for RPSI07_RS20700 in Ralstonia solanacearum PSI07

Annotation: LemA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF04011: LemA" amino acids 48 to 208 (161 residues), 198.3 bits, see alignment E=3.1e-63

Best Hits

KEGG orthology group: K03744, LemA protein (inferred from 100% identity to rsl:RPSI07_2686)

Predicted SEED Role

"LemA family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (208 amino acids)

>RPSI07_RS20700 LemA family protein (Ralstonia solanacearum PSI07)
MTSAPSFRPMRFSILRWLALALAVLAAPFLSACGYNDFQAKDEATKAAWAEVVNQYQRRA
DLIPNLVNTVKGYATHERETLEAVTRARAAATSIQVTPETLKDPAAFQKFQQAQGELSSA
LSRLMAVSENYPQLKADASFRDLQSQLEGTENRITVARQRYIRAVQDYNVLARSFPTNLT
AKVMGYEVKPSFTVENEKGISSAPAVKF