Protein Info for RPSI07_RS19970 in Ralstonia solanacearum PSI07

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 22 to 45 (24 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 91 to 109 (19 residues), see Phobius details amino acids 116 to 138 (23 residues), see Phobius details amino acids 148 to 174 (27 residues), see Phobius details amino acids 180 to 199 (20 residues), see Phobius details amino acids 229 to 251 (23 residues), see Phobius details amino acids 264 to 281 (18 residues), see Phobius details amino acids 292 to 310 (19 residues), see Phobius details amino acids 316 to 334 (19 residues), see Phobius details amino acids 346 to 367 (22 residues), see Phobius details amino acids 380 to 399 (20 residues), see Phobius details PF06779: MFS_4" amino acids 34 to 396 (363 residues), 398.1 bits, see alignment E=4.8e-123 PF07690: MFS_1" amino acids 34 to 338 (305 residues), 41.7 bits, see alignment E=7.5e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_2538)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>RPSI07_RS19970 MFS transporter (Ralstonia solanacearum PSI07)
MQHALSSSSSSSLPATGETRACAWRVAIAGMVALSVAMGIGRFAFTPILPMMLHDGSLTL
TQGSWLATGNYLGYFVGALACMAVRGDAARLIRIGLIATALLTVGMGALQGQPAWLVLRF
AAGMASALVFVFTAGWCLHRLTELGHAALGGIIFCGPGLGITIPGLVAGGMVALGWHAQS
AWIAFGVLSAVLTAAVWSTIRPEHQPHAAAPVLAGAGAAPSLDAPTLAITLAYGLAGFGY
IITATFLPVIARRVLPAGSIWPDLFWPIFGAGVALGAFLSTRISLARDNRTLLATAYAMQ
AVAVATGIAWPTVGGLALSSLLLGLPFTAITLFAMREARRLWPHAVPRLMGLMTAAYGIG
QIVGPPLANRLFAATGGFDASLAVAVVSLVCGMAMFLAVRRSAPVRA