Protein Info for RPSI07_RS19750 in Ralstonia solanacearum PSI07

Annotation: DUF748 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1264 transmembrane" amino acids 50 to 73 (24 residues), see Phobius details PF05359: DUF748" amino acids 186 to 337 (152 residues), 84.9 bits, see alignment E=7.2e-28 amino acids 402 to 550 (149 residues), 67 bits, see alignment E=2.3e-22 amino acids 618 to 769 (152 residues), 132.4 bits, see alignment E=1.6e-42 amino acids 874 to 1020 (147 residues), 140.3 bits, see alignment E=6.1e-45

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_2488)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1264 amino acids)

>RPSI07_RS19750 DUF748 domain-containing protein (Ralstonia solanacearum PSI07)
MTTSPDSPPDLQPNTTGWRARLGRWRNSPGWQRTARFGDQVWTSRRTRRIGLGVLIFLVV
FGLLGAVGGPPLLHHLAETQLSKYLERPVTVGKIRLNPYTLRLEIDQLHIAERDGKTPFV
DIGHLHVNAAWSSIFRRAPVIEELTVDAPRVRIVRTAEQRFNFSDIVDKLTQPEIPPKPK
SNEPARFVFANLQLNNGAIQFVDQPLGAQHTVDGLRIGVPFLASLPADVDIFVQPLLAAR
IDGAPLYFAGKTKPFAQSLESSLNIRLDGLDLPRYLGYVPGPLPVAVPQGKLTTDLTIDF
QKPNIGNPVLRVHGTAGLDSLEVTDAKKAPLVAAKQLRATLSDVRPLDNVYHLDTLSLDG
VRVDAVRAPDGSINFAQLGGKPAQTEAKPAPSAPVAQPKPLDVAVGKLQLANSSIHWRDA
TTQPAADLVLDDLHGDVAVRTLGGPTTLDVGAKLASGGTLNIKGSTSLEKRTGELELKLD
AIKLTGVEPYLRQAGAPQLQNGALSADGKIALEFGADKFNVRAEPLVATLADLALAPATR
NDTALRAKQLRADIKSFDLAARTLALNEVRGDGLQLDVLRKQDGSTVLTLLDTPQQAAAK
AKAAPAPAKSGTPAEKPWAVTVQTLRLDNGAVGFEDQTNSRPVKVRVEPLNVLVQNASTD
LGKPVDVQIGAGLGSKGKLDVRGNVVPQPLKADLRVNTQNLSLAGFDPYLDKSLNAAITS
ALLTMDGRLALNQGKALTVSYQGNATIGNVRLQDRVTSDDFLRWRSLALNRIQASYDGAT
PRVRVGALALSTFYARIIINPNGRLNLQDIRVQPTEEHRSLTQAAPGPVSSPAATPGGAV
AAAPAPATNPASAVTAGTPASSVATAPKAGGADLRIDAITLQDGNIRFTDNFVKPNYTAN
LTTIGGSVGTISTSAGQQPADVTLRGSVDGTAPVDIHGKVNPLAPTAFVDLSAKADDIEL
TNLTPYSAKYAGYPITKGKLTMDLHYLLDQGKLSADNHIFIDQLTFGDRVESKDATNLPV
RLAVALLKNSRGEIDVRVPVSGSLDDPQFSLGGVILRAFVNLIVRAVTAPFSLLANAFGG
SGGEELGYIEFDPGTAAISQASMARIDKLATALKDRPALKLDIIGRVDPATDRDGLRREA
VNRQIREQKLKDAGDASEADSTVKPEEMDKYLERAYKAAKFPKPRNVIGLAKSLPPDEMR
KLMETNVQVTDSDLRELAQRRANAVHVALAERVEPARLFVVAPKLDAEGIKDKGKTSRVD
FSLK