Protein Info for RPSI07_RS19635 in Ralstonia solanacearum PSI07

Annotation: deacetylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 PF00850: Hist_deacetyl" amino acids 20 to 304 (285 residues), 300.8 bits, see alignment E=5.7e-94

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_2465)

Predicted SEED Role

"Deacetylases, including yeast histone deacetylase and acetoin utilization protein" in subsystem Hydantoin metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (307 amino acids)

>RPSI07_RS19635 deacetylase (Ralstonia solanacearum PSI07)
MATGLYTHPEFLKHEMGRHHPECPDRLRAIEDQLIASRIDQFLVPCEAPPATEVQLCRVH
RPEYVRELVASVPVAGYVPIDPDTAMNPHTYMAAVLAAGAAVQATDKVIAGELENAFCCV
RPPGHHAEPGRAMGFCFFNNVAVAARHALDHHGLARVAIVDFDVHHGNGTEATFRDEPRV
LMCSFFQHPFYPYSGTEGVAANMVNIPLPAYTNGLTVREVVETIWLPRLEAFQPEMLFIS
AGFDAHREDDLGQMGLVEADYAWITRQLMLVARTHAKGRIVSCLEGGYNLSALGRSVVAH
VKALAEL