Protein Info for RPSI07_RS19320 in Ralstonia solanacearum PSI07

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 30 to 50 (21 residues), see Phobius details PF13174: TPR_6" amino acids 93 to 115 (23 residues), 14.2 bits, see alignment (E = 5.6e-06) amino acids 126 to 151 (26 residues), 13.1 bits, see alignment (E = 1.3e-05) PF14559: TPR_19" amino acids 99 to 155 (57 residues), 32.5 bits, see alignment E=8.9e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_2400)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (252 amino acids)

>RPSI07_RS19320 membrane protein (Ralstonia solanacearum PSI07)
MPFLGIGFHVIVALFFAVHAVRTHQNMYWLFILFAFPLLGSVAYFFAIYLPELRYSRGAR
VATRAVSQLIDPNRAVREARNDFDRAPTVQHRLRLGEALLEAGDAKEARQHFEQAATGPF
AGDQAVLLGLARAQFATGDAALAKATLDNLFEAHRVARQQPDPTLLYARALAASGAPGTR
EAFEQALTCANDAAARCLYGEWLLTQNSAADKDRARTLFDDILRDAKHWTRYAKDHNREW
LQRAQAAQSSFR