Protein Info for RPSI07_RS19165 in Ralstonia solanacearum PSI07

Annotation: Fe-S assembly protein IscX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 64 PF04384: Fe-S_assembly" amino acids 1 to 64 (64 residues), 101.7 bits, see alignment E=1.3e-33 TIGR03412: FeS assembly protein IscX" amino acids 2 to 64 (63 residues), 107.9 bits, see alignment E=1.7e-35

Best Hits

Swiss-Prot: 52% identical to ISCX_ECOL6: Protein IscX (iscX) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_2369)

Predicted SEED Role

"Believed to be involved in assembly of Fe-S clusters"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (64 amino acids)

>RPSI07_RS19165 Fe-S assembly protein IscX (Ralstonia solanacearum PSI07)
MKWNDIQQIAEALYDKYPDVDPTRLNFVDLHNKVVGLDSFDDDHKRGGEKFLEAIQQAWI
DEAE