Protein Info for RPSI07_RS18455 in Ralstonia solanacearum PSI07

Annotation: cupin domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 PF08007: JmjC_2" amino acids 125 to 238 (114 residues), 139.3 bits, see alignment E=7.9e-45 PF20514: ROXA-like_wH" amino acids 288 to 402 (115 residues), 88.3 bits, see alignment E=5.9e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_2227)

Predicted SEED Role

"FIG002776: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (409 amino acids)

>RPSI07_RS18455 cupin domain-containing protein (Ralstonia solanacearum PSI07)
MNELPLYAADRGVQPGLAAGRAAQLLGGLSPRDFMRTHWQKTPLLIRQALSPEDMRALHF
PLSPDALIKLAKREDVESRLIAQTRGRWTFNHGPFNERPLPSRKARNWTLLVQGVNLVEP
AVEALMQRFRFIPDARLDDVMISYATDGGGVGPHFDSYDVFLLQAHGRRRWRISSQNDLT
LVPDLPLKILANFTPEEEFVLEPGDMLYLPPHYAHDGVAEGDCMTYSIGFRSPSYRELAG
HFLGFLSQTLEDNPDFEGRYTDPDQKPAERPGELPAAMVRALAQKLNALRWTPELVGEFL
GAYLTEPKDHVEFVTQPRLSLARFTARARKEGIALDARTQALYDAQRFWINGDTFEPSGT
LLAWLSALSDQRGASAEAVDAATNLPDLMDTLHAWYEEGWLQLAGPGAR