Protein Info for RPSI07_RS18230 in Ralstonia solanacearum PSI07

Annotation: recombinase RecB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 961 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF12705: PDDEXK_1" amino acids 687 to 941 (255 residues), 106.3 bits, see alignment E=1.4e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_2188)

Predicted SEED Role

"Helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (961 amino acids)

>RPSI07_RS18230 recombinase RecB (Ralstonia solanacearum PSI07)
MQTLAFAPGPAFLSHAADAAWRFFDAHATDAPGAGVVVVPTAAQIPGVRGALHASAKAAG
ALRLLPRILTLGHWLLDLPPEPGLPAARSTLSRLLAVQQALKTQAWLREALGAQDEAALW
GVAQVLVTVSDELSQRWLTLDAADSETEGRHDALEAALSAALERTYAQLSERFLGTESRI
VLTFWQLLSGASDPIPVRLRAMRRLLDALCGPVVWMSPTDPEGADLDFLTRAAGRVPVLR
IGYDWQAREHAPAAVAPVTHAAFRDLLLHAWSECGTVAQQATQACAEVELPPPGLRIASA
ARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTT
RAAAALMRWIDVVQGDGDTAALLDLLKSPFCLRDADAPSSVAPAWVAELERRVRRHNVSG
GWGRLRRLVAERGMNADAADADAGDGPPTGRLAERLGLLADEAALWRRAGHATLDAWVTL
LAGTLDRLRMRTGLQNDDAGRQLLDWLDRLRVSVHGSADAGARFSLQEWRALLSMLLESA
VFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSNDVRRELGLP
DRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPNRLSGWLERLQRRLAVAGTRVDVP
VVLPALQTARQPTDMPAPAAPALVPSTLSAAAYNSLRRCPYQFFVGRMLRLGELEEVSDE
LEKRDIGELLHAILHRFHRQLLDTPMADPADRLALLQTLTDERFGPLLAEDGHALRFYRR
WQGVMTSYLAWQAAREAEGWRFEAGEVDAETSIALPGAQALRLRGRIDRVDTHPEHGVAV
LDYKTQSPIALARKAKMPFEDCQLPFYGLLDARAGAGGWVSLDGEARGDKRETGLPDFTQ
VVDWLTEQMGKDMTALAAGAPLPAFGDESACRYCGARGLCRKGYWSAGAPREPQPETEGQ
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