Protein Info for RPSI07_RS18195 in Ralstonia solanacearum PSI07

Annotation: GntR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF00126: HTH_1" amino acids 11 to 67 (57 residues), 58.5 bits, see alignment E=5.3e-20 PF03466: LysR_substrate" amino acids 92 to 298 (207 residues), 115.7 bits, see alignment E=1.9e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_2181)

Predicted SEED Role

"Transcriptional regulators, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>RPSI07_RS18195 GntR family transcriptional regulator (Ralstonia solanacearum PSI07)
MNLARFDLVTLGLFVAVARLGSISAGARQSHLAVAAASKRISDLEAAVGAPLLYRHAAGV
ELTEAGQACFRHAVGILQDVERMAGALSDFAAGTRGLVRVWANTSSITQFLADDLAAFML
ANPAIRIALEEQDSGDIVAALRENRADLGIFAAGTPCEGLQSFDYREDDLALVTPRGHPL
AGRKQVRFAEAVDFDFVSLPPGTSLAAQLLEESQRLGKPLRLRIQVRSFEAVCRMVASGL
GVGVLPRIAAQAHVASLPGAGLALVPLDDDWAHRRLLVGVRDPDALTSSARLLMAHLLGN
PAAL