Protein Info for RPSI07_RS17850 in Ralstonia solanacearum PSI07

Annotation: sterol desaturase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 324 transmembrane" amino acids 43 to 60 (18 residues), see Phobius details amino acids 81 to 103 (23 residues), see Phobius details amino acids 123 to 145 (23 residues), see Phobius details amino acids 186 to 211 (26 residues), see Phobius details PF04116: FA_hydroxylase" amino acids 135 to 279 (145 residues), 103.5 bits, see alignment E=5.9e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_2111)

Predicted SEED Role

"FIG00974709: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (324 amino acids)

>RPSI07_RS17850 sterol desaturase family protein (Ralstonia solanacearum PSI07)
MFDWVADTFTQAQDLLFQHVVMPLTYAIGMGGYVEDAYPGTEWLLMGLVQITVMLLVLRP
LERWRPVEPMQDRGAVRADIIYTLFHRLGFFPLLLFFTLQPLIDALDGKLRFWGWAHLNV
EDWWPGVTSISVVSFLVYLVLFDLLDYWYHRLSHKFHWWWSLHALHHSQQQMTLWSDDRN
HLLDDVLHGAVFAIAALVIGVEPSQYVLLVAISQLLQSLQHANVRLHFGWLGDRLLISPR
FHRLHHAIGLGHEVPGKPGVLGGCNFGVLFPWWDMLFGTAIFSPEYHATGIRDQLPMPQG
RSRDYGRGVLRQQWLGVKRLLGRA