Protein Info for RPSI07_RS17690 in Ralstonia solanacearum PSI07

Annotation: 23S rRNA pseudouridylate synthase B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 594 PF01479: S4" amino acids 217 to 260 (44 residues), 27 bits, see alignment 3e-10 PF00849: PseudoU_synth_2" amino acids 278 to 411 (134 residues), 64.3 bits, see alignment E=1.5e-21 TIGR00093: pseudouridine synthase" amino acids 282 to 442 (161 residues), 160.1 bits, see alignment E=1.9e-51

Best Hits

KEGG orthology group: K06178, ribosomal large subunit pseudouridine synthase B [EC: 5.4.99.12] (inferred from 100% identity to rsl:RPSI07_2079)

Predicted SEED Role

"Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70)" in subsystem Two cell division clusters relating to chromosome partitioning (EC 4.2.1.70)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.2.1.70, 5.4.99.12

Use Curated BLAST to search for 4.2.1.70 or 5.4.99.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (594 amino acids)

>RPSI07_RS17690 23S rRNA pseudouridylate synthase B (Ralstonia solanacearum PSI07)
MSADADAAAPRQDGAGDGAESSAPRRKGLRRGLRNLVAARRQQQEGRAEGESVGEGAADA
GQAAQAPRKARAPRSRKPKEANAATGEVAVVPAAMGAPAEGQPSGAEASAERRGPRGRFG
KGRRRQAEGQPAGERAEGPSGNAGGGNGGRGKNARPNRNAKAQGKAAGQTRGKGGKGAED
VFQYVISGAYDAEVDTGGAAQPTKVRELTSEDDAPKLHKILADAGLGSRRDMEDLILQGR
VSVNGLPAHIGQRILPTDQVRVNGKLIQRKLPNKAPRVLLYHKPAGEIVSQSDPEGRPTV
FDSLPRMKTGKWVAVGRLDFNTEGLLIFTTSGDIANRFMHPRYGVEREYAVRTLGELSES
DRQKLLQGVRLDDGEANFLSCADGGGEGVNHWYHVALTEGRNREVRRMFEAVNLTVSRLI
RTRYGSFVLPRGLKRGRWQEVSAEEVRVLMGLLGLKVPTASAGGGQGGQGGRQGNRRREA
QPALTGPMSSGFTGEATFQSRGMGVENGNRALPAPRRQPSPRQPDPMQTSMGYINVGGPT
TLTARTRMGGGGRALPGAGSGNGNRAPGNKRPVKGGGGLPNNGNKARGGKRGKR