Protein Info for RPSI07_RS17060 in Ralstonia solanacearum PSI07

Annotation: outer membrane protein assembly factor BamA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 765 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR03303: outer membrane protein assembly complex, YaeT protein" amino acids 30 to 765 (736 residues), 919.5 bits, see alignment E=8.6e-281 PF07244: POTRA" amino acids 31 to 97 (67 residues), 27.9 bits, see alignment E=4.8e-10 amino acids 99 to 178 (80 residues), 53.7 bits, see alignment E=4.1e-18 amino acids 182 to 269 (88 residues), 72.5 bits, see alignment E=5.8e-24 amino acids 272 to 350 (79 residues), 60.9 bits, see alignment E=2.4e-20 amino acids 353 to 427 (75 residues), 56.8 bits, see alignment E=4.6e-19 PF01103: Omp85" amino acids 454 to 765 (312 residues), 305.1 bits, see alignment E=1.2e-94

Best Hits

KEGG orthology group: K07277, outer membrane protein (inferred from 100% identity to rsl:RPSI07_1950)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (765 amino acids)

>RPSI07_RS17060 outer membrane protein assembly factor BamA (Ralstonia solanacearum PSI07)
MIRQHRFPLSVLAASVLTVCAGQAHAVEPFVIKDIRVEGVQRVEPGTVFGYLPVKVGETF
TDDKGAESIRALYNTGFFKDVQIRAEGNVLVVRVEERPAISQLEFIGIKEFDKDTLRRSL
RGVGVAEARYYDKSLIDRAEQELKRQYVSRGYYAADVQTTVTPVDANRVAVTFTVDEGPV
AKIRQINIVGNKAFSEGDLRDEMQLSTPNWLSWYTKNDLYSKQKLTADLEALRSFYLDRG
YLEFAIESTQVSITPDKKDIYLTLNIHEGEQYKVSDIKLTGELLSKQAEMEKLIKLKPGD
VFSSAKLSATTKAITDLLGTYGYAFATINPQPQIDQKSRTVALTLVVDPGRRVYVRRVNV
VGNSKTRDEVVRREMRQMESSWFDGEKLQLSQNRINRTGYFTDTNITTEDVPGTSDQVDV
NVNVTEKPTGQISLGVGFSSTDKLVLSAGIRQDNVFGSGTSLGLDVNTSKSNRTIAVTQY
DPYFTVDGISRSTELYYRTYRPLYYTGDQDYRIVQQGGNIKFGVPFSETDTVFFGIGYER
TTIDVTSNTPLVYQNYVAKNGRISNNFPITIGWSKDQRDSALVPTRGRYQQANLEIGIPG
GDLQYYRAYYQHQYFYPVSKSFTLAFNNEIGYGHGYGGKDFPVFKNYYAGGIGSVRGYET
STLGPRDANGVAIGGASKFVGNMEFIFPLPGSGVDRTVRLFTFFDYGNVFAEGQPFKVGD
MRYSTGFGLSWLSPIGPLKISMGFPIKKKAQDQAQRFQFQIGTAF